Chronic hepatitis B virus (HBV) infection remains difficult to cure due to the persistence of covalently closed circular DNA (cccDNA). Here, we developed an antigen locked nucleic acid system (
CS-1@LNA
) targeting the conserved 2404–2418 nt region of the HBV C gene, using a functionalized chitosan-based carrier to enhance stability and delivery efficiency.
CS-1@LNA
exhibited strong nuclease resistance and good biocompatibility. In HBV transgenic mice, tail vein administration of
CS-1@LNA
(0.5 µg/g) significantly reduced serum HBV DNA, HBsAg, and HBeAg levels, and suppressed hepatic C-mRNA expression without inducing liver or kidney toxicity. In addition,
CS-1@LNA
modulated apoptosis-related proteins by downregulating Cleaved-caspase-3 and Bax while upregulating Bcl-2. These findings demonstrate that
CS-1@LNA
effectively inhibits HBV replication and gene expression through a sequence-specific antigen mechanism, highlighting its potential as a safe and efficient nucleic acid–based therapeutic strategy.